‘A war of atrocities’ – UN human rights investigators warn Sudanese civilians are paying the highest price

“They burned everything,” said one witness of a shelling attack in the Zamzam displacement camp in war-torn Darfur. “They claimed they only wanted to fight soldiers, but they punished the whole community.”

The war crimes and human rights violations perpetrated by all parties to the conflict between the military government and Rapid Support Forces (RSF) militia are documented in the latest report to the UN Human Rights Council, published by the UN’s investigative body probing violations in Sudan, known as the Independent International Fact-Finding Mission (FFM). 

The report, ‘A War of Atrocities” found that both the Sudanese army (SAF) and the RSF have directed large-scale attacks against civilians and vital infrastructure including medical centres, constituting serious violations of international law.

Systematic human rights abuses

Our findings leave no room for doubt: civilians are paying the highest price in this war,” said Mohamed Chande Othman, chair of the FFM.

According to the report, civilians are being targeted by both sides for their real or perceived affiliation with the opposing side. Executions, torture, and rape have become a daily horror for many communities in the war-torn country.

The RSF intentionally directed attacks against non-Arab communities in the besieged Darfuri city of El Fasher and the surrounding region, increasing the toll on what the UN refugee agency, UNHCR, calls the world’s fastest-growing displacement crisis.

Around 12.1 million people have fallen victim to forced displacement as of July. More civilians were killed or fled after the SAF targeted the state of Gezira.

Violence against women

Many civilians interviewed for the report said that they had suffered sexual assault. One witness said that she, along with other women and underaged girls, was subjected to rape in an abandoned building.

Victims – especially women and children, who bear the greatest burden – deserve justice and reparations,” said Joy Ngozi Ezeilo, one of the independent investigators.

For women and girls in Sudan, receiving psychological or medical support is nearly impossible both because of the fear of retaliation from reporting violence and because of regular RSF and SAF attacks on hospitals.

Risk for humanitarian workers

Over 84 Sudanese humanitarian workers were killed, and more were arbitrarily detained between the start of war in April 2023 and April this year after intentional attacks and kidnappings.

The FFM is also conducting an ongoing investigation on a drone attack against a joint World Food Programme and UNICEF convoy in June. Five humanitarian workers died in the attack while several others were injured.

Meanwhile, humanitarian aid continues to be delayed or obstructed.

A ‘roadmap for justice’

Our report not only exposes atrocities, it also lays out a roadmap for justice,” said FFM expert Mona Rishmawi.

The warring parties, mediators, and civil society can all play a role in ending the conflict, as outlined in the report.

Civil society initiatives, such as the Sudanese youth-led initiative “emergency rooms”, are some of the ways in which local communities can begin to repair the fabric of basic human rights law across Sudan.

The report also calls on the international community to enforce an arms embargo, back the International Criminal Court (ICC), and stop cooperating with any combatants or civilians suspected of war crimes, among other recommendations.

The international community has the tools to act. Failure to do so would not only betray the Sudanese people – it would betray the very foundations of international law,” said Mr. Othman.

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South Sudanese ‘are counting on us’, top UN official tells Security Council

Referencing the recent quarterly report from the Secretary-General on challenges facing the world’s youngest nation, Ms. Pobee underscored that since March, previous gains in the peace process have been largely eroded.

Military offensives, primarily involving South Sudan’s rival militia which answers to the First Vice President and Government troops loyal to the President, have continued, and trust in the 2018 Revitalized Peace Agreement between the two has been undermined.

Murithi Mutiga, another briefer from the International Crisis Group, explained that the 2018 agreement required President Salva Kiir to work in concord with his rival, First Vice President Riek Machar; thus, the agreement was effectively terminated when President Kiir placed the former Vice President under house arrest on 26 March.

Humanitarian crisis

Ms. Pobee highlighted that recent military offensives have resulted in deaths, displacement and the destruction of civilian infrastructure.

Furthermore, the displacement crisis is a two-way street, Mr. Murtiga explained: the devastating civil war in neighbouring Sudan has driven 1.2 million refugees into South Sudan, straining already-limited resources.

The conflict in Sudan has also disrupted oil flows to the military Government-controlled Port Sudan and the broader market, causing South Sudan to lose most of its valuable oil revenues.

Mr. Murtiga also underscored that this is one of South Sudan’s worst humanitarian crises since independence in 2011, with 9.3 million in need of dire assistance and 7.7 million suffering food insecurity, including 83,000 at risk of catastrophic conditions, all while brutal sexual violence is on the rise.

And funding cuts are leaving millions without lifesaving assistance, Ms. Pobee emphasised. Halfway through 2025, the Humanitarian Needs and Response Plan is only 28.5 per cent funded.

Additionally, challenges to humanitarian access are growing with increased instances of aid workers being attacked, as poor infrastructure and administrative obstacles impede relief efforts.

Call to act

The UN, African Union, regional intergovernmental development body, IGAD, and many others in the international community, have repeatedly called for a cessation of hostilities and a return to dialogue without any concrete response from the warring parties.

Martha Ama Akyaa Pobee, Assistant Secretary-General for Africa in the Departments of Political and Peacebuilding Affairs and Peace Operations, addresses the Security Council meeting on Sudan and South Sudan.

While government officials have publicly expressed their commitment to elections by December 2026, the Parties must take steps to return to dialogue and make the necessary decisions to move the country forward. Declarations of commitment are not enough,” Ms. Pobee stressed.

She urged the Security Council to call on all actors and stakeholders to uphold the peace agreement. If they fail to lay the groundwork for peaceful, credible elections in December 2026, the risk of a relapse into violence will rise significantly amid growing regional instability.

It is the shared responsibility of the international community to work with the South Sudanese parties to avoid such a failure, she stressed. “The people of South Sudan are counting on us.”

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1.3 million Sudanese return home, offering fragile hope for recovery

“The thousands of people seeking to return home are driven by hope, resilience and an enduring connection to their country,” said Othman Belbeisi, regional director of the International Organization of Migration (IOM).  

While this development does offer hope, many of these people are returning to states and cities whose resources have been devastated by over two years of war.  

Since conflict broke out in April 2023, over 12 million Sudanese have been forcibly displaced, representing the largest displacement crisis in the world.

One-third of these displaced people have fled into neighbouring countries such as Chad and South Sudan, which are increasingly struggling to support the influx of refugees.  

“Not only do [the returnees] mark a hopeful but fragile shift, they also indicate already stretched host countries under increasing strain,” said Mamadou Dian Balde, the regional coordinator for the UN’s refugee agency, UNHCR.  

‘A race against time’

IOM emphasized that for these returns to accord with international law, they must be voluntary and dignified. Most of the 1.3 million Sudanese returnees are heading to Khartoum, Al Jazirah and Sennar states where the impact of the conflict is still very acute.  

In Khartoum specifically, many buildings — including the UNHCR office — are in ruins and public infrastructure, such as roads and power plants, has been compromised or destroyed.  

“Without urgent action, people will be coming back to cities that are in ruins. We are in a race against time to clear the rubble and provide water, power and healthcare,” said Abdallah Al Dardair, director of the Arab States for the UN Development Programme (UNDP).  

Additionally, Khartoum is already housing many internally displaced people and people who had formerly sought asylum in Sudan before the war broke out.  

Returnees also face danger from unexploded ordnance and high rates of gender-based and sexual violence against women and girls. To address the psychosocial and protection needs of these women and girls, safe spaces have been set up in Khartoum and Al Jazirah states.

Key to recovery 

In highlighting the hope that these returns signal, Mr. Belbeisi emphasized that returnees must be seen as active participants in the recovery of conflict-ridden Sudan.  

“Those heading home are not passive survivors, they are vital to Sudan’s recovery. Yes, the humanitarian situation is dire, but with the right support, returnees can revive local economies, restore community life, and foster hope where it’s needed most,” he said.

However, humanitarian work in and around Sudan is drastically underfunded — only 23 per cent of the estimated $4.2 billion dollars needed for the next year has been received, meaning that life-saving services may have to be scaled back.  

“More than evidence of people’s desire to return to their homeland, these returns are a desperate call for an end to the war so that people can come back and rebuild their lives,” Mr. Balde said.   

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Funding shortages threaten relief for millions of Sudanese refugees: WFP

In an alert, the UN agency warned that it faces having to make “drastic cuts” to life-saving food assistance, which may “grind to a halt” in the Central African Republic, Egypt, Ethiopia and Libya in the coming months as resources run out.

WFP noted that the situation for many Sudanese refugees is already dire, more than two years since war erupted between Sudan’s national army and paramilitary rebels.

“In Uganda, many vulnerable refugees are surviving on less than 500 calories a day” – less than a quarter of daily nutritional needs – as new arrivals strain refugee support systems, WFP said. In Chad, which hosts almost a quarter of the four million refugees who fled Sudan, food rations will be reduced in the coming months without new contributions.

Vulnerable youngsters

Children are particularly vulnerable to sustained periods of hunger and malnutrition rates among young refugees in reception centres in Uganda and South Sudan have already breached emergency thresholds. According to WFP, refugees are already severely malnourished even before arriving in neighbouring countries to receive emergency assistance.

“This is a full-blown regional crisis that’s playing out in countries that already have extreme levels of food insecurity and high levels of conflict,” said Shaun Hughes, WFP Emergency Coordinator for the Sudan Regional Crisis.

“Millions of people who have fled Sudan depend wholly on support from WFP, but without additional funding we will be forced to make further cuts to food assistance. This will leave vulnerable families, and particularly children, at increasingly severe risk of hunger and malnutrition.”

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Hospital bombing deepens bleak situation for war-weary South Sudanese

“Every time this happens, people lose access to health services – and sometimes, to hope,” said Dr Humphrey Karamagi, the UN World Health Organization (WHO)’s Representative in South Sudan. “Health is the last safety net. If it fails, everything else will also fall.”

The apparent airstrike on the hospital run by Médecins Sans Frontières (MSF) in Old Fangak in eastern Jonglei state, killed seven civilians and injured another 20, according to the UN humanitarian affairs coordination office (OCHA).

Healthcare not a target

The attack is the eighth time healthcare has been targeted since January “with health workers killed, facilities and essential supplies looted or destroyed”, the WHO official told journalists in Geneva.

“More attacks may lead to closing half the health facilities along the Nile,” he added.

Dr. Karamagi explained that humanitarian convoys and essential cold chain infrastructure had come under fire, at a time of escalating violence that has impacted civilians since South Sudan gained independence in 2011, descending shortly afterwards into civil war.  

Since March, tensions have escalated in Upper Nile state, with deadly clashes between Government forces and armed groups. This has uprooted an estimated 80,000 people in three of the most affected counties, the WHO official said.

He added that clashes have also been reported in parts of Western Equatoria, Central Equatoria and Unity states, forcing communities – “mostly women and children” – to flee into neighbouring countries, including 23,000 arrivals in Ethiopia.

Diseases spreading

Back in South Sudan, outbreaks of cholera, malaria, measles and mpox are spreading rapidly, prompting the UN health agency to deploy rapid response teams and coordinate with local partners where possible, amid access restrictions linked to the escalating violence.

“The alternative, if we do nothing, would be bleak,” the WHO official warned, pointing to cholera cases that may double in just six weeks and measles deaths that could increase by up by 40 per cent.

Cholera alone has infected more than 55,000 people since September, killing over 1,000, the UN health agency said.

‘War crime’ condemnation

In a related development, the UN Commission on Human Rights (OHCHR) in South Sudan condemned the bombing as a potential war crime.

“This was not a tragic accident,” said Yasmin Sooka, Chair of the Commission. “It was a calculated, unlawful attack on a protected medical facility.”

MSF confirmed the hospital’s complete destruction, including its pharmacy and emergency care units. Further aerial bombardments were also reported in New Fangak, raising fears that such attacks are part of a broader military campaign.

The airstrike followed public threats by South Sudanese military forces who demanded the return of seized boats and labelled multiple Nuer-majority counties, including Fangak, as “hostile”.

“Designating entire communities as hostile is deeply irresponsible and may amount to collective punishment,” said Commissioner Barney Afako.

Plea for action

The UN Commission has urged immediate investigations into the bombing and warned that repeated violations threaten to derail South Sudan’s fragile peace.

With high-level delegations from the African Union and IGAD now in the capital Juba, calls for renewed dialogue are growing louder. “The path South Sudan is currently on is perilous,” Ms. Sooka warned. “If attacks like these continue with impunity, the Peace Agreement risks becoming meaningless.”

In his final appeal, Dr Karamagi emphasised the cost of inaction: “Help us make sure this doesn’t become the moment health – and hope – finally give way.”

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Exhausted Sudanese flee into Chad as fighting escalates

Nearly 20,000 people – mainly traumatized women and children – have reached Chad in the past two weeks, according to the UN refugee agency, UNCHR.

Most arrived in Chad with nothing – no food, money or identification,” said Magatte Guisse, UNHCR Representative in Chad. “Several wounded individuals, including children and elderly women, reportedly fell from vehicles during the chaotic escape.”

Chad is one of the poorest countries in the world and already hosts 1.3 million refugees.

This includes nearly 800,000 people from Sudan since war broke out between the Sudanese Armed Forces and paramilitary Rapid Support Forces in April 2023, after a breakdown in transition to civilian rule.  

Heavy fighting in Sudan has devastated much of the country, likely killed tens of thousands and displaced almost nine million people, UN agencies say.

No food, no money

In Chad, the Tine border crossing in Wadi Fira Province has seen the sharpest spike in new arrivals, with more than 6,000 people in just two days,

Sudanese refugees are exposed to robbery and extortion at checkpoints – and many have also witnessed men being killed, women and girls sexually abused, and homes burned to the ground.

The refugee agency reported that armed groups have extorted, robbed or sexually assaulted around 76 per cent of the newly arrived refugees.

A nation of 19 million people where resources are already strained, Chad is overstretched and needs “increased solidarity and immediate funding, to ensure these vulnerable populations receive the protection and assistance they need, now”.

Renewed attacks on Port Sudan 

In a related development, a third day of drone strikes hit the international airport and a power station in Port Sudan, the UN’s humanitarian hub for coordinating aid operations across Sudan.

The city is the current seat of government and until this weekend had been largely spared from the violence that is ongoing in Khartoum, Darfur and elsewhere. Thousands of people fleeing the war have also sought shelter in Port Sudan.

Port Sudan airport is a lifeline for humanitarian operations, serving as the primary entry point for aid personnel, medical supplies and other lifesaving relief that is coming into Sudan,” said Jens Laerke, spokesperson for the UN aid coordination office, OCHA. The airport is “immensely important”, he told journalists in Geneva.

According to reports, the Red Sea city suffered a complete power outage after drone strikes hit a large power station on Tuesday. Other strikes reportedly hit an army base in the city centre, a fuel depot and a hotel close to the airport, which is located near to the presidential palace.

These attacks have increased the “already severe” lack of aid access and delivery challenges facing humanitarian teams across the country, explained Mr. Laerke, adding that such violence is prohibited under international humanitarian law. 

It is widely believed that the paramilitary Rapid Support Forces are responsible for the attacks. No UN facilities or operations have been impacted but UN Humanitarian Air Service flights in and out of the city have been paused.

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